This high protein bagel with Greek yogurt is the ultimate way to enjoy a fluffy, golden bagel without all the fuss. Unlike traditional bagels that take hours, this version is quick, easy, and ready in just 20 minutes.

It’s a healthy bagel recipe that feels indulgent, but it’s also protein-packed, versatile, and something the whole family will love.
Whether you’re making them for breakfast or meal prep, these protein bagels with Greek yogurt are irresistible every single time.
What is a High Protein Bagel?
A high protein bagel is a lighter, faster twist on the classic bagel. Instead of yeast and long proofing times, this dough uses simple ingredients like flour, baking powder, Greek yogurt, and sometimes protein powder for an extra boost.
The result is a chewy, golden-brown protein bagel that delivers the same comfort as the original, but satisfies your hunger! For anyone looking for healthy bagels that don’t compromise on flavor or texture, this recipe is a game-changer.
Why You’ll Love This High Protein Bagel Recipe
- Quick and easy: This high protein bagel recipe comes together in less than 30 minutes — no yeast or rising required.
- Delicious texture: Soft on the inside, golden brown on the outside, just like a bakery-style bagel.
- Protein-packed: Made with Greek yogurt and optional protein powder, these protein bagels keep you satisfied longer.
- Healthy comfort food: Finally, a healthy bagel recipe that actually tastes as good as the original.
- Versatile and customizable: From everything bagel seasoning to sesame or onion, you can make these protein bagels with Greek yogurt your own.
Ingredients
- All Purpose or Whole Wheat Flour: The foundation of the dough, giving the bagel its structure and chewy bite. I prefer whole wheat flour to make these extra healthy!
- Unflavored Protein Powder: Optional, but it adds extra protein to make these even higher protein bagels.
- Baking Powder: Helps the dough rise quickly, so you don’t need yeast.
- Salt: Balances flavors and enhances every bite.
- Greek Yogurt: I like 2% milk fat — it gives creaminess, tang, and protein to these protein bagels with Greek yogurt.
- Egg: Adds richness and helps give the bagels that golden color.
- Toppings (everything bagel mix, sesame seeds, dried onion, etc.): Brings crunch and flavor, making these healthy bagels irresistible. Customize to make it your own!
Customizations
- Flour swap: Use gluten-free flour if you want a gluten-friendly version of this high protein bagel recipe.
- Extra protein: Add the protein powder for more of a boost!
- Flavor twist: Mix in garlic powder, dried herbs, or even cinnamon sugar for sweet or savory variations.
How to Make High Protein Bagel with Greek Yogurt
Make the dough
In a large bowl, whisk together the flour, protein powder (if using), baking powder, and salt. Add the Greek yogurt and egg, then stir until a sticky dough forms.


Shape the bagels
Lightly flour your hands or use gloves to keep the dough from sticking. Divide it into 4 equal portions and roll into balls. Flatten slightly with your palms, then poke a hole in the center to create the classic protein bagel shape.


Add toppings
Sprinkle your favorite toppings — everything bagel seasoning, sesame seeds, or dried onion — and gently press them into the dough so they stick.

Cook the bagels
Air Fryer: Place the bagels in a single layer in the basket (don’t overcrowd — 4 should fit). Air fry at 300°F for 14–17 minutes until golden and cooked through.
Oven: Bake at 350°F for 20–25 minutes until the high protein bagels are golden brown.

Rest and enjoy
Allow the bagels to rest for 5–10 minutes before eating. This step helps them finish setting. Enjoy warm or at room temperature.


Storage
Store leftover protein bagels in an airtight container at room temperature for up to 2 days, or refrigerate for up to 5 days.
Tips
- Don’t skip the rest: Cooling for at least 5 minutes helps the texture of these healthy bagels set.
- Leave space when baking: Whether in the oven or air fryer, avoid overcrowding so each protein bagel cooks evenly.
- Switch up toppings: Beyond everything bagel mix, try sesame, poppy seeds, garlic flakes, or cinnamon sugar for fun variations.
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High Protein Bagel with Greek Yogurt
Equipment
Ingredients
- 1 cup all purpose or whole wheat flour
- ½ scoop unflavored protein powder optional
- 2 teaspoon baking powder
- ½ teaspoon salt
- 1 cup greek yogurt I prefer 2% milkfat
- 1 egg
- Topping: everything bagel, sesame seeds, onion, etc.
Instructions
- In a large bowl, whisk together the flour, protein powder (if using), baking powder, and salt. Add the Greek yogurt and egg, then stir until a sticky dough forms.
- Lightly flour your hands or use gloves. Divide the dough into 4 equal portions and roll into balls. Use your palms to flatten the bagel slightly then use your finger to poke a hole in the middle.
- Sprinkle your favorite seasonings (everything bagel mix, sesame seeds, dried onion, etc.) on top of each bagel.
- Place the bagels in a single layer in the air fryer basket (don’t overcrowd — 4 should fit in one batch). Air fry at 300°F for 14–17 minutes, until golden and cooked through. For oven method, bake at 350°F for 20-25 minutes until golden brown and cooked through.
- Let the bagels rest for 5–10 minutes before eating to finish setting. Enjoy warm or at room temperature.




Stephanie says
This was really good, I think maybe I could add more protein powder because it was super wet sticky. It had more of a biscuit taste too me but I'm good with that!
Herman says
Thanks so much Stephanie for the review! Yes feel free to adjust the protein powder amount but don't put more than 1 scoop as I think it would make the bagel too tough. Also, if the batter is still very wet, you can add a tiny bit more flour but it should be sticky.